An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Find hotels in Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
6 Nov - 8 Nov
Next weekend
13 Nov - 15 Nov

Filter by

Property class

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for Mission Bay hotels

A pool area with a hot tub, lounge chairs, and umbrellas.

1. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,483 reviews)
"Really good hotel !!!"
United States
Assy Prune Celia
The price is AED 621
AED 819 total
includes taxes & fees
30 Nov - 1 Dec
The Dana on Mission Bay
A poolside view with a lounge chair, a towel, a tray with a drink and a coconut, and a pool with palm trees in the background.

2. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,665 reviews)
"Amazing rooms and service!!"
United States
Aaroosh
The price is AED 521
AED 793 total
includes taxes & fees
29 Nov - 30 Nov
San Diego Mission Bay Resort
A resort pool with a lazy river, palm trees, and a view of the ocean.

3. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,628 reviews)
"Beautiful and the breakfast was delicious!"
United States
Megan
The price is AED 628
AED 916 total
includes taxes & fees
18 Nov - 19 Nov
Hyatt Regency Mission Bay Spa and Marina
An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.

4. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,971 reviews)
"Loved staying at Paradise Point!"
United States
victor
The price is AED 692
AED 989 total
includes taxes & fees
29 Nov - 30 Nov
Paradise Point Resort & Spa
A modern hotel with a courtyard featuring outdoor seating, a chess table, and a well-maintained lawn.

5. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
2.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,469 reviews)
"Everything about this place was great."
United States
Evelin
The price is AED 528
AED 606 total
includes taxes & fees
8 Nov - 9 Nov
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
A spacious kitchen with a central island, wooden ceiling, and modern lighting fixtures.

6. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.3 km from Mission Bay
8.8 out of 10, Excellent, (1,012 reviews)
"Great place to rest your head"
United States
Kenneth
The price is AED 466
AED 536 total
includes taxes & fees
9 Nov - 10 Nov
Holiday Inn Express San Diego - SeaWorld Area by IHG
A modern dining area with wooden tables and chairs, a central bar area, and a view of the city through large windows.

7. La Quinta Inn & Suites by Wyndham San Diego Mission Bay

La Quinta Inn & Suites by Wyndham San Diego Mission Bay
3.0 star property
North Pacific Beach, 3.5 km from Mission Bay
8.0 out of 10, Very good, (1,624 reviews)
"OK place to stay in proximity to airport"
United States
David
The price is AED 429
AED 493 total
includes taxes & fees
8 Nov - 9 Nov
La Quinta Inn & Suites by Wyndham San Diego Mission Bay
A hotel room with a large bed, a TV, a desk with a lamp, and a bookshelf.

8. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
2.5 star property
3.6 km from Mission Bay
8.0 out of 10, Very good, (3,105 reviews)
"Clean and spacious room, good breakfast, nice staff."
United States
Antonia
The price is AED 470
AED 540 total
includes taxes & fees
15 Nov - 16 Nov
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
A hotel with a central courtyard, palm trees, and a fountain.

9. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,558 reviews)
"Nice hotel, close to everything."
United States
Sheri
The price is AED 446
AED 513 total
includes taxes & fees
30 Nov - 1 Dec
Hilton Garden Inn San Diego Old Town/SeaWorld Area
An outdoor seating area with fire pits, lounge chairs, and a modern building in the background.

10. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
3.0 star property
4.2 km from Mission Bay
8.8 out of 10, Excellent, (1,748 reviews)
"Clean room, very friendly staff, great breakfast."
United States
Edith
The price is AED 506
AED 581 total
includes taxes & fees
1 Dec - 2 Dec
Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
A reception desk with a wooden panel wall, a crescent-shaped logo, and a digital payment terminal.

11. Comfort Inn San Diego - SeaWorld Area

Comfort Inn San Diego - SeaWorld Area
3.5 star property
2.8 km from Mission Bay
8.6 out of 10, Excellent, (4,280 reviews)
"Excellent stay"
United States
Dharmeshkumar
The price is AED 390
AED 449 total
includes taxes & fees
30 Nov - 1 Dec
Comfort Inn San Diego - SeaWorld Area
A living room with a large window, a flat-screen TV, and a patterned rug.

12. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,441 reviews)
"Great stay!"
United States
Arman
The price is AED 392
AED 451 total
includes taxes & fees
3 Nov - 4 Nov
GreenTree Inn San Diego Mission Bay
An outdoor lounge area with seating, a fire feature, and a view of the building's interior.

13. Hampton Inn San Diego/Mission Valley

Hampton Inn San Diego/Mission Valley
2.5 star property
4.3 km from Mission Bay
8.6 out of 10, Excellent, (1,819 reviews)
"Great location, quiet, great breakfast , would stay there again."
United States
Blake Douglas
The price is AED 496
AED 571 total
includes taxes & fees
8 Nov - 9 Nov
Hampton Inn San Diego/Mission Valley
A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

14. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,173 reviews)
"great stay"
United States
Sarah
The price is AED 352
AED 405 total
includes taxes & fees
9 Nov - 10 Nov
Wyndham Garden San Diego Near SeaWorld
A pool area with lounge chairs and palm trees.

15. Best Western Plus Hacienda Hotel Old Town

Best Western Plus Hacienda Hotel Old Town
3.0 star property
Old Town San Diego, 3.7 km from Mission Bay
8.4 out of 10, Very good, (2,200 reviews)
"Wonderful place to stay"
United States
shon
The price is AED 509
AED 585 total
includes taxes & fees
8 Nov - 9 Nov
Best Western Plus Hacienda Hotel Old Town
A hotel entrance with a stone archway, a reception desk, and potted plants.

16. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,102 reviews)
"The good thing is has a shuttle to the airport or shuttle to the train"
United States
Manea
The price is AED 500
AED 574 total
includes taxes & fees
8 Nov - 9 Nov
Holiday Inn Express San Diego Airport - Old Town by IHG
A building with a "Bienvenidos" sign, palm trees, and a well-maintained garden.

17. Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.0 out of 10, Wonderful, (2,050 reviews)
"Great staff and great breakfast"
United States
Gene
The price is AED 475
AED 546 total
includes taxes & fees
3 Dec - 4 Dec
Old Town Inn
A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

18. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,738 reviews)
"Friendly front desk staff, clean room, and great complimentary breakfast!"
United States
Carolyn
The price is AED 539
AED 620 total
includes taxes & fees
22 Nov - 23 Nov
Hampton Inn & Suites San Diego Airport Liberty Station
An outdoor patio area with tables and chairs, string lights, and a building with balconies.

19. Fairfield Inn & Suites San Diego Old Town

Fairfield Inn & Suites San Diego Old Town
3.0 star property
Old Town San Diego, 4.1 km from Mission Bay
8.8 out of 10, Excellent, (1,224 reviews)
"great Breakfast and Great Location"
United States
Daniel
The price is AED 449
AED 516 total
includes taxes & fees
15 Nov - 16 Nov
Fairfield Inn & Suites San Diego Old Town
A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

20. Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
5.6 km from Mission Bay
8.4 out of 10, Very good, (2,104 reviews)
"Clean rooms, great breakfast"
United States
Elizabeth
The price is AED 418
AED 480 total
includes taxes & fees
16 Nov - 17 Nov
Best Western Yacht Harbor Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Compare popular hotels in Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet friendly
WiFi included
A pool area with a hot tub, lounge chairs, and umbrellas.
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,483 reviews
View
An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,971 reviews
View
A poolside view with a lounge chair, a towel, a tray with a drink and a coconut, and a pool with palm trees in the background.
San Diego Mission Bay Resort
4.0 star property
8.6
Excellent
1,665 reviews
View
A resort pool with a lazy river, palm trees, and a view of the ocean.
Hyatt Regency Mission Bay Spa and Marina
4.0 star property
8.4
Very good
1,628 reviews
View
A modern architectural entrance with a central archway, illuminated by wall-mounted lights, flanked by planters with cacti, and a pathway leading through the arch.
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
488 reviews
View

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.
A large stadium with the sign "Cobo Park" and palm trees around it.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

A pier extending into the ocean with buildings at the end, under a partly cloudy sky.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

A theater marquee with ornate designs and the name "Gaslamp Quarter".

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

A coastal cityscape with a long sandy beach, a pier, and dense urban buildings.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

A coastal walkway with a statue, benches, and people.

Point Loma

This seaside hilly peninsula offers marine recreation, yachting, and whale watching. Explore Cabrillo National Monument, Old Point Loma Lighthouse, and Sunset Cliffs Natural Park. Enjoy local shops and eateries at Liberty Station and Point Loma Village.

Top Mission Bay Hotel Reviews

The Dana on Mission Bay

The Dana on Mission Bay

8/10 Good
"The firefly restaurant is worth the visit. The Dana was located in the heart of where we wanted to be. One surprise was the room, not what we had envisioned as a 4 star hotel. There wasn't a door from the main room to the sink. The toilet shower area was quite small as well. It did have ready hot water at all times which were greatly appreciated. Lacking in appeal it was still a good place to stay."
Hitesh 5-night trip
Posted 3 hours ago
The Dana on Mission Bay

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on our traveler data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighborhood include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 37 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.
What is there to do around this San Diego neighborhood?
Enjoy a stroll along the shore at Ski Beach, Mission and Pacific Beaches, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighborhood. Don't miss favorite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot, and Hotel Circle. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.