Find Boutique Hotels in San Rafael, CA

Start date: Check-in selected.
To Date
End date: Check-out
  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check availability on San Rafael Boutique Hotels

This weekend
Next weekend

Top San Rafael Boutique Hotels

Carneros Resort and Spa

5.0 star property
Napa
9.2 out of 10, Wonderful, (354)
"Excellent hotel!"
United States
Yiting
The price is AED 2,201
AED 2,831 total
includes taxes & fees
18 Dec - 19 Dec
Carneros Resort and Spa

MacArthur Place Hotel & Spa

4.0 star property
Sonoma
9.4 out of 10, Exceptional, (850)
"Lovely hotel! Great facilities, delicious food."
United States
Sara
The price is AED 2,641
AED 3,271 total
includes taxes & fees
7 Dec - 8 Dec
MacArthur Place Hotel & Spa

Berkeley City Club

2.5 star property
Telegraph District
8.8 out of 10, Excellent, (695)
"Wonderful, beautiful, old world hotel, right in the heart of bustling Berkeley. "
United States
Peter
Berkeley City Club

Hotel Zephyr San Francisco

4.0 star property
Fisherman's Wharf
8.6 out of 10, Excellent, (2334)
"It was close to everything and had a great outdoor area with beautiful views of the harbor."
United States
Ramon J
The price is AED 434
AED 641 total
includes taxes & fees
7 Dec - 8 Dec
Hotel Zephyr San Francisco

Hotel Abri - Union Square

3.5 star property
Union Square
8.6 out of 10, Excellent, (1001)
"Very nice hotel"
United States
Mariam
The price is AED 359
AED 569 total
includes taxes & fees
4 Jan - 5 January 2026
Hotel Abri - Union Square

Argonaut Hotel

4.5 star property
Fisherman's Wharf
9.4 out of 10, Exceptional, (1198)
"Fantastic location, clean, large rooms. The staff are great. Met all of our requests and gave great advice on things to do and see in SF."
United States
Daniel
The price is AED 694
AED 973 total
includes taxes & fees
7 Dec - 8 Dec
Argonaut Hotel

Hotel Emblem San Francisco

4.0 star property
Union Square
9.4 out of 10, Exceptional, (1000)
"Nice room, helpful staff and great location. "
United States
Okan
The price is AED 485
AED 718 total
includes taxes & fees
2 Jan - 3 January 2026
Hotel Emblem San Francisco

The Marker Union Square San Francisco

4.0 star property
Union Square
9.0 out of 10, Wonderful, (1086)
"Nice room and courteous staff"
United States
JESUS
The price is AED 484
AED 570 total
includes taxes & fees
18 Dec - 19 Dec
The Marker Union Square San Francisco

Harbor Court Hotel

4.0 star property
Downtown San Francisco
9.0 out of 10, Wonderful, (1001)
"Favorite getaway- great staff, clean rooms very accommodating "
United States
Leticia
The price is AED 511
AED 770 total
includes taxes & fees
13 Dec - 14 Dec
Harbor Court Hotel

Warwick San Francisco

4.0 star property
Union Square
8.2 out of 10, Very Good, (1009)
"Room was very nice! Staff was wonderful! "
United States
Brian
The price is AED 334
AED 527 total
includes taxes & fees
1 Jan - 2 January 2026
Warwick San Francisco
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top San Rafael Hotel Reviews

Explore a world of travel with Expedia

Frequently asked questions

What's there to see and do in San Rafael?
The shopping, festivals, and restaurants are just some of the things to enjoy while you're in the area. While you're out and about in San Rafael, popular attractions like Pier 39, Oracle Park, and Chase Center are worth a visit. You might also like to explore more of the area and take in additional sights like Mission San Rafael Arcangel, Marin County Civic Center, and China Camp State Park while you're here.
What kind of weather should I plan for when I travel to San Rafael?
Getting an idea of what to expect from the weather in San Rafael will help you enjoy your stay to the fullest. The hottest months are usually September and August with an average temp of 63°F, while the coldest months are January and February with an average of 51°F. Average annual precipitation for San Rafael is 21 inches.
What's the best way to get to my boutique hotel in San Rafael?
You have a few options for getting to San Rafael. The closest major airport is Oakland Intl. Airport (OAK), which is located 25 mi (40.3 km) from the heart of the city. If you'd like to explore around the area, consider renting a car to take in more sights.