Find Boutique Hotels in San Rafael, CA

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check availability on San Rafael Boutique Hotels

This weekend
Next weekend

Our top choices for San Rafael boutique hotels

Carneros Resort and Spa

Carneros Resort and Spa
5.0 star property
Napa
9.2 out of 10, Wonderful, (356 reviews)
"Excellent hotel!"
United States
Yiting
The price is AED 2,201
AED 2,831 total
includes taxes & fees
4 Feb - 5 Feb
Carneros Resort and Spa

Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
Fisherman's Wharf
8.6 out of 10, Excellent, (2,404 reviews)
"The balcony view was amazing and parking was perfect. "
United States
Ena M
The price is AED 460
AED 692 total
includes taxes & fees
9 Feb - 10 Feb
Hotel Zephyr San Francisco

MacArthur Place Hotel & Spa

MacArthur Place Hotel & Spa
4.0 star property
Sonoma
9.4 out of 10, Exceptional, (854 reviews)
"Beautiful property and great food"
United States
Natalya
The price is AED 2,182
AED 2,764 total
includes taxes & fees
29 Jan - 30 Jan
MacArthur Place Hotel & Spa

Berkeley City Club

Berkeley City Club
2.5 star property
Telegraph District
8.8 out of 10, Excellent, (699 reviews)
"Wonderful, beautiful, old world hotel, right in the heart of bustling Berkeley. "
United States
Peter
Berkeley City Club

Hotel Triton

Hotel Triton
4.0 star property
Union Square
8.8 out of 10, Excellent, (1,000 reviews)
"We had a great stay!"
United States
Jeremy
The price is AED 360
AED 584 total
includes taxes & fees
1 Feb - 2 Feb
Hotel Triton

Argonaut Hotel

Argonaut Hotel
4.5 star property
Fisherman's Wharf
9.4 out of 10, Exceptional, (1,234 reviews)
"Ok hotel in a good location"
United States
Catia
The price is AED 740
AED 1,031 total
includes taxes & fees
16 Feb - 17 Feb
Argonaut Hotel

The Marker Union Square San Francisco

The Marker Union Square San Francisco
4.0 star property
Union Square
9.0 out of 10, Wonderful, (1,178 reviews)
"Great staff, great vibe, beautiful hotel, lovely room."
United States
Nanette
The price is AED 541
AED 637 total
includes taxes & fees
1 Feb - 2 Feb
The Marker Union Square San Francisco

Hotel Emblem San Francisco

Hotel Emblem San Francisco
4.0 star property
Union Square
9.4 out of 10, Exceptional, (1,010 reviews)
"We enjoyed our stay, close to cable cars shopping dining bars "
United States
HALEY
The price is AED 531
AED 772 total
includes taxes & fees
29 Jan - 30 Jan
Hotel Emblem San Francisco

Palihotel San Francisco

Palihotel San Francisco
3.5 star property
Union Square
8.4 out of 10, Very Good, (645 reviews)
"Great staff, fun and warm atmosphere"
United States
Michael
The price is AED 386
AED 546 total
includes taxes & fees
29 Jan - 30 Jan
Palihotel San Francisco

The Clift Royal Sonesta San Francisco

The Clift Royal Sonesta San Francisco
4.0 star property
Union Square
9.2 out of 10, Wonderful, (1,398 reviews)
"Perfect location Great staff Very clean "
United States
ELISA
The price is AED 493
AED 723 total
includes taxes & fees
16 Feb - 17 Feb
The Clift Royal Sonesta San Francisco
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top San Rafael Hotel Reviews

Explore a world of travel with Expedia

Frequently asked questions

What's there to see and do in San Rafael?
The shopping, festivals, and restaurants are just some of the things to enjoy while you're in the area. While you're out and about in San Rafael, popular attractions like Pier 39, Oracle Park, and Chase Center are worth a visit. You might also like to explore more of the area and take in additional sights like San Francisco Bay, Mission San Rafael Arcangel, and Marin County Civic Center while you're here.
What kind of weather should I plan for when I travel to San Rafael?
Getting an idea of what to expect from the weather in San Rafael will help you enjoy your stay to the fullest. The hottest months are usually September and August with an average temp of 63°F, while the coldest months are January and February with an average of 51°F. Average annual precipitation for San Rafael is 21 inches.
What's the best way to get to my boutique hotel in San Rafael?
You have a few options for getting to San Rafael. The closest major airport is Oakland Intl. Airport (OAK), which is located 25 mi (40.3 km) from the heart of the city. If you'd like to explore around the area, consider renting a car to take in more sights.