Top Lodges in Nagasaki Prefecture in 2026

A narrow street lined with shops and signs, including a flower shop and a restaurant.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Check prices for these dates

Next weekend

In two weeks

In one month

In two months

Our top choices for Nagasaki Prefecture lodges

A wooden deck with picnic tables overlooking the ocean.

1. Tonosaki Bungalow & BBQ

Tsushima

YOUNGJUN

AED 257 total

12 Nov - 13 Nov

A bedroom with a large window overlooking a deck.

2. Nokonoshima Island Park Villa Sakimori

Nishi Ward

Jason

AED 431 total

2 Dec - 3 Dec

View all properties

Save an average of 15% on thousands of hotels when you're signed in

Top Nagasaki Prefecture Hotel Reviews

JR KYUSHU HOTEL Nagasaki

8/10 Good

"Very convenient for station but hard to locate on Google! Served us very well very comfortable and clean with great bathroom facilities. Location good for sightseeing. Breakfast included was ok."

FAV LUX NAGASAKI

10/10 Excellent

"This was our favourite place in Japan. Huge room with lots of amenities: laundry, stove top, all built in. Large shower room with tub and bidet room. Bed was comfortable and they had poofier pillows than our other Japanese stays. Very quiet and blackout. Location was a bit south of the main area; close to Glover Gardens tourist area and walkable to Shinchi Chinatown; we walked to Nagasaki Station as well though there were transit options. The one downside to the hotel is they don't ship luggage, you have to go through the nearby 7/11 which was a bit stressful since we didn't know how to fill out the forms. Included breakfast was good with a few different options but not huge."