Find & Book the Best Hotels in Jefferson County for 2026

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Our top choices for Jefferson County hotels

A waterfront hotel with multiple boats docked in front.

1. Riveredge Resort

Alexandria Bay Downtown

B

AED 485 total

includes taxes & fees

1 Oct - 2 Oct

A spacious living room with a wooden ceiling, a fireplace, a television, and a dining area with red chairs and a table.

2. Capt.'s Inn & Suites

Alexandria Bay

Greg

AED 265 total

includes taxes & fees

1 Oct - 2 Oct

A waterfront property with docked boats, a boathouse, and a large house with a landscaped garden.

3. Bonnie Castle Resort & Marina

Alexandria Bay Downtown

Frederick

AED 378 total

includes taxes & fees

18 Oct - 19 Oct

A view of a large body of water with a historic building in the background.

4. Capt. Thomson's Resort

Alexandria Bay Downtown

Dorothea

AED 326 total

includes taxes & fees

15 Oct - 16 Oct

A multi-story hotel with a well-maintained lawn and outdoor seating area.

5. 1000 Islands Harbor Hotel

Clayton

julie

AED 794 total

includes taxes & fees

1 Oct - 2 Oct

A Ramada hotel entrance with a clear sky, a red awning, and two potted plants.

6. Ramada by Wyndham Watertown/Thousand Islands NY

Watertown

Jiewu

AED 229 total

includes taxes & fees

30 Oct - 31 Oct

A sign with the text 'It only takes a spark' and a yellow star, a glass door leading to an interior space, and a yellow chair.

7. Spark by Hilton Watertown

Watertown

Christopher

AED 348 total

includes taxes & fees

14 Oct - 15 Oct

A wooden deck with a railing overlooking a body of water and a distant shoreline.

8. West Winds Motel & Cottages

Clayton

michael

A hotel room with a large bed, a nightstand, a lamp, a chair, and a window with curtains.

9. Comfort Inn & Suites Watertown - 1000 Islands

Watertown

Yandry

AED 392 total

includes taxes & fees

22 Oct - 23 Oct

A white building with the letters "RL" on the front.

10. Rock Ledge Motel

Alexandria Bay

Donna

AED 308 total

includes taxes & fees

1 Oct - 2 Oct

A Holiday Inn Express building with a covered entrance, a landscaped garden, and a parking area.

11. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

Bridget

AED 432 total

includes taxes & fees

30 Oct - 31 Oct

A hotel room with a bed, a bathroom with a bathtub, and a picture on the wall.

12. Days Inn by Wyndham Watertown Fort Drum

Calcium

Robert

AED 310 total

includes taxes & fees

18 Oct - 19 Oct

A modern living room with a flat-screen TV, comfortable seating, and a fireplace.

13. Quality Inn & Suites Watertown Fort Drum

Calcium

Nicole

AED 269 total

includes taxes & fees

25 Oct - 26 Oct

A marina with boats docked, a dock extending into the water, and a building with a large water tower in the background.

14. Otter Creek Inn

Alexandria Bay Downtown

Tom

AED 285 total

includes taxes & fees

1 Oct - 2 Oct

An indoor swimming pool with clear water, surrounded by lounge chairs and tables, and large windows allowing natural light.

15. Adirondack Efficiencies Watertown

Watertown

Blair

AED 326 total

includes taxes & fees

1 Oct - 2 Oct

A gazebo with a stone fire pit in the center, surrounded by outdoor seating and a brick pathway.

16. Hilton Garden Inn Watertown/Thousand Islands

Watertown

Suzanne

AED 508 total

includes taxes & fees

18 Oct - 19 Oct

17. Travel Inn

Watertown

Trina

AED 253 total

includes taxes & fees

1 Oct - 2 Oct

18. Thousand Island Hart House

Wellesley Island

Elaine

AED 816 total

includes taxes & fees

3 Oct - 4 Oct

A hotel lobby with a bar area, seating arrangements, and a television mounted on the wall.

19. Hampton Inn Watertown

Watertown

Wanda

AED 398 total

includes taxes & fees

17 Oct - 18 Oct

A wooden double door with intricate carvings and a sign above stating "ROXY HOTEL EST. 1894".

20. The Roxy Cape Vincent

Cape Vincent

Debra

AED 479 total

includes taxes & fees

5 Oct - 6 Oct

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Great weekend hotel deals in Jefferson County, NY

Showing deals for:9 Oct - 11 Oct

Hills Motor Court & Marina

Alexandria Bay

8.2/10Very Good (118 reviews)

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Cute Clayton Village Apartment. Dog friendly. With Boat Parking.

Clayton

9.6/10Exceptional (19 reviews)

10% off

2-bedroom apartment just a short walk from the Saint Lawrence River.

Clayton

9.2/10Wonderful (7 reviews)

5% off

Rose Cottage family home - year round - ADA friendly

Cape Vincent

10/10Exceptional (3 reviews)

10% off

Pristine Downtown Clayton Village Home Just Steps Away From Everything!

Clayton

10/10Exceptional (37 reviews)

10% off

Luxurious 3-bedroom custom built home in the heart of the Thousand Islands

Alexandria Bay

10/10Exceptional (11 reviews)

15% off

Beautiful Waterfront Family Getaway: Immerse Yourself in Nature's Beauty!

Cape Vincent

10/10Exceptional (23 reviews)

10% off

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Top Jefferson County Hotel Reviews

Riveredge Resort

10/10 Excellent

"beautiful views and beautiful weather."

Ramada by Wyndham Watertown/Thousand Islands NY

8/10 Good

"The place meets minimal expectations. Primarily the room and bed were clean, which is what I needed most. The rest of the building is old (probably built in the '70's) so it shows its age in places. The hallway carpeting on the 2nd floor was pretty stained-up; could use a good shampooing. Not sure how other floors looked. Inside the room there were chips in the bathtub finish and on the floor tile, just due to being old but still usable. Ottoman had shoe stains on it. Otherwise, the room was clean so that's most important. The thing that bothered me most is the room's flooring was fake hardwood. Wasn't most pleasant to step on a cold floor in the morning. Plus I'm sure that fake hardwood doesn't help muffle noises from other rooms. No other guests were obnoxiously loud but I did wake up to my neighbor getting up/scuffling around his-or-her room at 4AM. I'm sure that noise would've been significantly less IF our rooms had carpet in them. But the fake hardwood was clean and dust-free so that's most important! Breakfast was good - scrambled eggs, sausage, muffins, cereals (I had raisin bran), apples, toast, bagles, orange/apple juice dispenser, lemon water, coffee...enough choices to get your day started. The staff were all friendly and helpful. I only contacted them for check-in, later when I couldn't remember my room number, another time when my room card quit working, and check-out; all positive interactions. In all, not the Four Seasons, but worth crashing at for a weekend."

1000 Islands Harbor Hotel

8/10 Good

"First of all, the staff were unfailingly friendly throughout our stay. And the food at dinner and breakfast was mostly good. That's why 4 stars instead of 3. The location is delightful - we had a partial river/partial parking lot view (glorious sunrise) - and is seconds from the riverfront walk and pretty 'downtown' Clayton. The rooms were spacious and the beds were comfortable. However... the floors in the room get mopped with water that doesn't get changed enough - the room was musty, and our shoes, slippers, and feet were sticking to the floor the whole weekend. When we had to move a bedside table to get at a functioning outlet, there was dust and dirt and bits of old food underneath (also under the beds). The bathroom was large, chilly, and echo-y - even the toilet paper was a bit disappointing (fragile single layer stuff). There are refrigerators in the room but no tea/coffee making machines. The hotel goes to a lot of trouble to put coffee, hot water, tea bags, hot chocolate packets, etc. out in the elevator lobbies on each floor every morning, but it was always (even at 6:30 am) weak and lukewarm. The bottom line is that this hotel wants to appear fancier than it is. It feels like - perhaps because of the economic climate - they've had to cut some corners. Set your expectations accordingly."

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Our top choices for Jefferson County hotels

1. Riveredge Resort

2. Capt.'s Inn & Suites

3. Bonnie Castle Resort & Marina

4. Capt. Thomson's Resort

5. 1000 Islands Harbor Hotel

6. Ramada by Wyndham Watertown/Thousand Islands NY

7. Spark by Hilton Watertown

8. West Winds Motel & Cottages

9. Comfort Inn & Suites Watertown - 1000 Islands

10. Rock Ledge Motel

11. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

12. Days Inn by Wyndham Watertown Fort Drum

13. Quality Inn & Suites Watertown Fort Drum

14. Otter Creek Inn

15. Adirondack Efficiencies Watertown

16. Hilton Garden Inn Watertown/Thousand Islands

17. Travel Inn

18. Thousand Island Hart House

19. Hampton Inn Watertown

20. The Roxy Cape Vincent

Great weekend hotel deals in Jefferson County, NY

Showing deals for:9 Oct - 11 Oct

Image gallery for Hills Motor Court & Marina

Hills Motor Court & Marina

Top Jefferson County Hotel Reviews

Riveredge Resort

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