A lighthouse on a rocky coastline with the ocean in the foreground.

Search Apartments in San Juan Islands

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

In two weeks
In two months
In three months
In four months

Our top choices for San Juan Islands apartments

1. Madrona Suite-Lower Rates- Fall on Orcas Island- rest where sea meets stillness

Madrona Suite-Lower Rates- Fall on Orcas Island- rest where sea meets stillness
Eastsound
10.0 out of 10, Exceptional, (28 reviews)
"My husband and I had a lovely stay. The property is beautiful and quiet. Jodi was communicative and accommodating."
United States
Heather H.
The price is AED 876
AED 1,350 total
includes taxes & fees
2 Nov - 3 Nov
Madrona Suite-Lower Rates- Fall on Orcas Island- rest where sea meets stillness

2. Heart of Deer Harbor - Harbormaster House

Heart of Deer Harbor - Harbormaster House
Deer Harbor
10.0 out of 10, Exceptional, (5 reviews)
"Loved the house! Beautiful view, nicely decorated, very comfortable. Will definitely stay here again!"
United States
Cndi B.
The price is AED 980
AED 2,131 total
includes taxes & fees
2 Nov - 3 Nov
Heart of Deer Harbor - Harbormaster House

3. New Suite! Water View! (CS-Yakima)

New Suite! Water View! (CS-Yakima)
Friday Harbor
9.4 out of 10, Exceptional, (6 reviews)
"Great location, effective arrangements. Can be noisy and doesn't contain enough kitchen items to eat or prepare food at the rental. But steps away from the ferry and all of Friday harbor's amenities"
United States
Andrew L.
New Suite! Water View! (CS-Yakima)

4. New Suite! Downtown! (CS-Evergreen State)

New Suite! Downtown! (CS-Evergreen State)
Friday Harbor
10.0 out of 10, Exceptional, (2 reviews)
"Rating Details: The property manager was very helpful. The vacation rental was spotless. I was very happy with the location. I was very satisfied with the condition of the vacation rental. Overall, I recommend this vacation rental. Reviewer Comments: It was great and I would stay again. We brought our Grandson for a B-day whale watching trip. The room was very roomy everything was new and clean. The location couldn't have been better."
United States
Anonymous traveler
New Suite! Downtown! (CS-Evergreen State)

5. New Suite! Harbor View! (CS-Kaleetan)

New Suite! Harbor View! (CS-Kaleetan)
Friday Harbor
8.0 out of 10, Very good, (5 reviews)
"Rating Details: The property manager was more than helpful. The vacation rental was spotless. I was happy with the location. I was more than satisfied with the condition of the vacation rental. Overall, I do not recommend this vacation rental. Reviewer Comments: The unit is clean, newly remodeled and spacious. I would suggest to put in a sofa or a couple of chairs so guesss can sit there and enjoy the view. And a small table with chairs near the kitchenette.On Friday evening the sky wine bar...
United States
Lingyun P.
New Suite! Harbor View! (CS-Kaleetan)

6. New Suite! Downtown! (CS-Elwha)

New Suite! Downtown! (CS-Elwha)
Friday Harbor
10.0 out of 10, Exceptional, (1 review)
"Very clean room, great location!"
United States
David J.
New Suite! Downtown! (CS-Elwha)

7. New Suite! Downtown! (CS-Tillikum)

New Suite! Downtown! (CS-Tillikum)
Friday Harbor
8.0 out of 10, Very good, (2 reviews)
"We stayed at this location when visiting Friday Harbor, and it in a perfect location. Right off the ferry and everything you need is in walking distance. Parking is a little difficult with the time limits, but this is just the town rules in general. We parked by the courthouse to help maximize our time, and felt like this was the best and easiest. Overall a great place to stay. It was clean and comfortable. Highly recommend."
United States
Jennifer R.
New Suite! Downtown! (CS-Tillikum)

8. New Suite! Downtown! (CS-Sealth)

New Suite! Downtown! (CS-Sealth)
Friday Harbor
9.4 out of 10, Exceptional, (3 reviews)
"Great location right at water's edge, great view. Balcony was nice. Newly renovated. Lots of space. All wonderful as long as you don't need a table and chairs to eat off of or work from. 300 at IKEA would make this the perfect rental."
United States
Corinne T.
New Suite! Downtown! (CS-Sealth)

9. New Suite! Downtown Friday Harbor! (CS- Chelan)

New Suite! Downtown Friday Harbor! (CS- Chelan)
Friday Harbor
7.4 out of 10, Good, (3 reviews)
"Right in downtown, convenient location."
United States
Kiran
New Suite! Downtown Friday Harbor! (CS- Chelan)

10. Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!

Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!
Anacortes
10.0 out of 10, Exceptional, (38 reviews)
"Great location. I would stay here again. "
United States
Holly J.
The price is AED 463
AED 556 total
includes taxes & fees
2 Nov - 3 Nov
Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!

11. Sea View Inn Summary:

Sea View Inn Summary:
Anacortes
9.2 out of 10, Wonderful, (49 reviews)
"The view and location are fabulous. Comfortable place to stay."
United States
Ann G.
The price is AED 507
AED 905 total
includes taxes & fees
2 Nov - 3 Nov
Sea View Inn Summary:

12. Sunny Island Cliff Side Views

Sunny Island Cliff Side Views
Anacortes
9.8 out of 10, Exceptional, (61 reviews)
"We enjoyed our brief stay very much"
United States
Uli M.
The price is AED 702
AED 1,136 total
includes taxes & fees
3 Nov - 4 Nov
Sunny Island Cliff Side Views

13. Welcome to Tranquility Place, Whidbey Island

Welcome to Tranquility Place, Whidbey Island
Oak Harbor
9.8 out of 10, Exceptional, (18 reviews)
"We had a great stay! The bathroom is really nice and the view from the bed was lovely."
United States
Kerry K.
The price is AED 378
AED 607 total
includes taxes & fees
17 Nov - 18 Nov
Welcome to Tranquility Place, Whidbey Island

14. Studio with covered deck and Birch Bay View

Studio with covered deck and Birch Bay View
Blaine
7.6 out of 10, Good, (4 reviews)
"Great weather and great locatio6"
United States
michael c.
The price is AED 320
AED 828 total
includes taxes & fees
2 Nov - 3 Nov
Studio with covered deck and Birch Bay View

15. Creekside Studio- right across from the Beach.

Creekside Studio- right across from the Beach.
Birch Bay
9.4 out of 10, Exceptional, (20 reviews)
"This is a great unit, plenty of parking, outside seating, gorgeous sunsets and right across the street from public beach access"
United States
Kelly A.
The price is AED 290
AED 866 total
includes taxes & fees
2 Nov - 3 Nov
Creekside Studio- right across from the Beach.

16. 900 square foot Studio loft in Fairhaven

900 square foot Studio loft in Fairhaven
South Bellingham
10.0 out of 10, Exceptional, (86 reviews)
"Quiet, clean and cozy"
United States
Aubrey
The price is AED 489
AED 1,062 total
includes taxes & fees
5 Nov - 6 Nov
900 square foot Studio loft in Fairhaven

17. The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive

The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive
Bellingham
10.0 out of 10, Exceptional, (32 reviews)
"Charming property, comfy, clean and well appointed."
United States
Sara M.
The price is AED 661
AED 1,012 total
includes taxes & fees
4 Nov - 5 Nov
The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive

18. Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA

Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA
Ferndale
9.0 out of 10, Wonderful, (7 reviews)
"Cameron was super friendly and accommodating. The place was just what we needed for one night. It was private and well taken care of. Looking forward to coming back. "
United States
Josefine V.
The price is AED 275
AED 431 total
includes taxes & fees
2 Nov - 3 Nov
Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA

19. Downtown Bellingham Apartment

Downtown Bellingham Apartment
Lettered Streets
10.0 out of 10, Exceptional, (86 reviews)
"Convenient for downtown events. Very thoughtful hosts."
United States
Germone S.
The price is AED 514
AED 790 total
includes taxes & fees
2 Nov - 3 Nov
Downtown Bellingham Apartment

20. Galbraith Mountain Forest Escape

Galbraith Mountain Forest Escape
Bellingham
10.0 out of 10, Exceptional, (23 reviews)
"Great experience!! We felt very taken care of and glad to stay. We will stay again next time."
United States
Eric F.
Galbraith Mountain Forest Escape
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Save an average of 15% on thousands of hotels when you're signed in

Top San Juan Islands Hotel Reviews

Explore a world of travel with Expedia