Find Boutique Hotels in San Juan Islands, WA

Start date: Check-in selected.
To Date
End date: Check-out

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on San Juan Islands Boutique Hotels

Top San Juan Islands Boutique Hotels

No exact matches found, but these alternatives could be just right

Recommended hotels in San Juan Islands

Room, 1 Queen Bed (View) | Balcony view
Outlook Inn

Outlook Inn

3.0 star property
Eastsound
9.2 out of 10, Wonderful, (504)
"Good at restaurant was excellent. Property right in town so could walk to everything. "
United States
Patricia
The price is AED 765
AED 900 total
includes taxes & fees
2 Dec - 3 Dec
Outlook Inn
Outdoor spa tub
Otters Pond Bed & Breakfast

Otters Pond Bed & Breakfast

4.0 star property
Eastsound
10.0 out of 10, Exceptional, (60)
"Lovely, relaxing stay with excellent breakfast. "
United States
Juli
The price is AED 711
AED 784 total
includes taxes & fees
19 Dec - 20 Dec
Otters Pond Bed & Breakfast
Traditional Cabin, 1 Bedroom, Non Smoking, Beach View (No Pets) | Beach/ocean view
West Beach Resort

West Beach Resort

3.5 star property
Eastsound
9.4 out of 10, Exceptional, (106)
"What a great spot! Popular, so just book your next stay before you leave! Pet friendly cabins mean the puppers get a vacation too! Can't wait to go back to this little slice of low-key, peaceful paradise. "
United States
Kimberley
The price is AED 598
AED 660 total
includes taxes & fees
1 Dec - 2 Dec
West Beach Resort
Front of property
Snug Harbor Resort

Snug Harbor Resort

2.5 star property
Friday Harbor
9.8 out of 10, Exceptional, (424)
"Perfect and romantic place!!!"
United States
Sorangel
The price is AED 757
AED 835 total
includes taxes & fees
23 Nov - 24 Nov
Snug Harbor Resort
Front of property
Friday Harbor Suites

Friday Harbor Suites

2.5 star property
Friday Harbor
8.4 out of 10, Very Good, (1001)
"If all you need is a bed, shower and coffee - which was all we were looking for - then this is the place to stay. "
United States
Susan
The price is AED 680
AED 753 total
includes taxes & fees
1 Dec - 2 Dec
Friday Harbor Suites
King Suite w/View - Quarryman Hall
Roche Harbor Resort

Roche Harbor Resort

3.0 star property
Friday Harbor
9.2 out of 10, Wonderful, (411)
"Fantastic stay!"
United States
Seaby
Roche Harbor Resort
Exclusive Suite, 1 King Bed, Non Smoking, Sea View | Terrace/patio
Rosario Village

Rosario Village

2.0 star property
Eastsound
7.2 out of 10, Good, (77)
"Great stay nice room view all good."
United States
Daniel
The price is AED 479
AED 620 total
includes taxes & fees
26 Nov - 27 Nov
Rosario Village
Hypo-allergenic bedding, down comforters, in-room safe, desk
Friday Harbor House

Friday Harbor House

3.5 star property
Friday Harbor
9.6 out of 10, Exceptional, (235)
"Great getaway or business trip spot to stay in near the ferry terminal and downtown shops "
United States
Robert
The price is AED 613
AED 678 total
includes taxes & fees
23 Nov - 24 Nov
Friday Harbor House
Property grounds
Bird Rock Hotel

Bird Rock Hotel

2.0 star property
Friday Harbor
8.8 out of 10, Excellent, (362)
"Having stayed at Bird Rock and Earthbox I'd choose Earthbox for my next visit to Friday Harbor. Both properties are well decorated and maintained but, despite Bird Rock's convenience, for those who are walking from the ferry, Earthbox has the advantage of being a quiet location who's rooms ( or at least my room ) have sleeping areas that are not flooded with light ( during typical sleeping hours). The staff are very helpful and welcoming."
United States
Tara
The price is AED 676
AED 748 total
includes taxes & fees
23 Nov - 24 Nov
Bird Rock Hotel
Exterior
Lopez Islander Resort

Lopez Islander Resort

3.5 star property
Lopez Island
8.6 out of 10, Excellent, (358)
"We had a lovely stay"
United States
SAMUEL
The price is AED 584
AED 644 total
includes taxes & fees
23 Nov - 24 Nov
Lopez Islander Resort
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Black Friday Sale

Limited-time deals: Save up to 50% on select hotels
Book now

Top San Juan Islands Hotel Reviews

The Edenwild Boutique Inn

The Edenwild Boutique Inn

10/10 Excellent
"This place is cute and quaint, and the location is perfect - walkable to everything in the main "village" area. The rooms are unique (I peaked inside a few) and homey, and there are many lovely common areas such as outdoor seating and a wraparound porch. It was calm and quiet despite being fully booked, and when we did run into other guests it felt like we were all friends staying together. "
Hadassah 1-night trip
Posted 4 months ago
The Edenwild Boutique Inn

Explore a world of travel with Expedia