Find Boutique Hotels in San Marcos, CA

Start date: Check-in selected.
To Date
End date: Check-out

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on San Marcos Boutique Hotels

Tonight
6 Dec - 7 Dec
Tomorrow
7 Dec - 8 Dec
Next weekend
12 Dec - 14 Dec
In two weeks
19 Dec - 21 Dec

Top San Marcos Boutique Hotels

Front of property
Pantai Inn

Pantai Inn

3.5 star property
Village of La Jolla
9.4 out of 10, Exceptional, (1001)
"It was good location and ocean view."
United States
Insook
The price is AED 851
AED 1,063 total
includes taxes & fees
25 Dec - 26 Dec
Pantai Inn
Outdoor pool, pool umbrellas
The Lodge at Torrey Pines

The Lodge at Torrey Pines

5.0 star property
Torrey Pines
9.2 out of 10, Wonderful, (878)
"Excellent all around!"
United States
Julie
The price is AED 1,407
AED 1,875 total
includes taxes & fees
4 Jan - 5 January 2026
The Lodge at Torrey Pines
Outdoor pool
La Valencia Hotel

La Valencia Hotel

4.0 star property
Village of La Jolla
8.6 out of 10, Excellent, (1002)
"Great staff and atmosphere!"
United States
Sachiyo
La Valencia Hotel
Exterior
L'Auberge Del Mar

L'Auberge Del Mar

5.0 star property
Del Mar
8.8 out of 10, Excellent, (825)
"The location was beautiful. Staff was very friendly."
United States
Quynh N
The price is AED 1,392
AED 1,828 total
includes taxes & fees
14 Dec - 15 Dec
L'Auberge Del Mar
Terrace/patio
Scripps Inn La Jolla Cove

Scripps Inn La Jolla Cove

3.5 star property
Village of La Jolla
9.2 out of 10, Wonderful, (912)
"The room was great and had a great view of the ocean. "
United States
Christine
Scripps Inn La Jolla Cove
Outdoor pool
Inn At Rancho Santa Fe

Inn At Rancho Santa Fe

5.0 star property
Covenant
9.4 out of 10, Exceptional, (131)
"Very nice stay"
United States
Anonymous traveler
The price is AED 1,649
AED 1,844 total
includes taxes & fees
7 Dec - 8 Dec
Inn At Rancho Santa Fe
Property grounds
Rancho Valencia Resort and Spa

Rancho Valencia Resort and Spa

5.0 star property
Rancho Santa Fe
9.8 out of 10, Exceptional, (138)
"It was a perfect get away for our anniversary!"
United States
Sam
The price is AED 3,915
AED 4,512 total
includes taxes & fees
6 Jan - 7 January 2026
Rancho Valencia Resort and Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top San Marcos Hotel Reviews

Lakehouse Resort

Lakehouse Resort

10/10 Excellent
"Exceeded all expectations!!!!!"
Robert 1-night trip
Posted 3 days ago
Lakehouse Resort

Explore a world of travel with Expedia

Frequently asked questions

What's there to see and do in San Marcos?
The beaches, shopping, and lakefront are just some of the things to enjoy while you're in the area. Activities and attractions to experience around San Marcos include LEGOLAND® California, San Diego Zoo Safari Park, and Twin Oaks Golf Club. Some other things you might want to enjoy include California Center For The Arts, Belly Up, and GIA Museum.
What kind of weather should I plan for when I travel to San Marcos?
Having a good idea of the weather in San Marcos will help you enjoy your stay to the fullest. The hottest months are usually August and September with an average temp of 71°F, while the coldest months are February and January with an average of 55°F. Average annual precipitation for San Marcos is 14 inches.
What's the best way to get to my boutique hotel in San Marcos?
You have a few options for getting to and around San Marcos. The closest major airport is Carlsbad, CA (CLD-McClellan-Palomar), which is located 6.6 mi (10.7 km) from the heart of the city, but San Diego, CA (MYF-Montgomery Field) may also be an option. If you'd like to venture out around the area, consider renting a car to take in more sights.